Vignette 3: Enhancer sequence similarity between dogs and humans

The files for Vignette 3 are hosted in CSC Object Storage.

Base URL:

https://a3s.fi/swift/v1/use-case-3/

To download a file, append the file name to the end of the base URL.

Available files:

7Feb_enhancer_robust.canFam4-hg19.proj
blast_matches_overlapping_enhancer_promoter_interactions.bed
dog_genes_orthologous_in_human.txt
filtered_blast_hits.tsv
human_genes_with_enhancer_interactions_from_ABC.txt
liftover_blast_enhancers_overlap.txt
overlap_common_genes_orthology.txt

Example:

https://a3s.fi/swift/v1/use-case-3/7Feb_enhancer_robust.canFam4-hg19.proj

Direct download URLs:

https://a3s.fi/swift/v1/use-case-3/7Feb_enhancer_robust.canFam4-hg19.proj
https://a3s.fi/swift/v1/use-case-3/blast_matches_overlapping_enhancer_promoter_interactions.bed
https://a3s.fi/swift/v1/use-case-3/dog_genes_orthologous_in_human.txt
https://a3s.fi/swift/v1/use-case-3/filtered_blast_hits.tsv
https://a3s.fi/swift/v1/use-case-3/human_genes_with_enhancer_interactions_from_ABC.txt
https://a3s.fi/swift/v1/use-case-3/liftover_blast_enhancers_overlap.txt
https://a3s.fi/swift/v1/use-case-3/overlap_common_genes_orthology.txt

The files can also be downloaded from the command line using wget. For example:

wget https://a3s.fi/swift/v1/use-case-3/7Feb_enhancer_robust.canFam4-hg19.proj

Note:

This is an Object Storage container. Opening only the base URL will not automatically list or download the files. The desired file name must be appended to the base URL.